Selected Publications

A full and up-to-date publication list is available at Google Scholar.

Multiscale neural signatures of major depressive, anxiety, and stress-related disorders.

Zhukovsky P., Wainberg, M., Milic M., Tripathy, S.J., Mulsant B.H., Felsky D., Voineskos, A.N.
Proceedings of the National Academy of Sciences


LaminaRGeneVis: a tool to visualize gene expression across the laminar architecture of the human neocortex.

Kim, E. H., Howard, D., Chen, Y., Tripathy, S. J.*, & French, L.*
Frontiers in Neuroinformatics


Bulk and Single-nucleus Transcriptomics Highlight Intra-telencephalic and Somatostatin Neurons in Alzheimer's Disease.

Consens, M.E., Chen, Y., Menon, V., Wang, Y., Schneider, J.A., De Jager, P.L., Bennett, D.A., Tripathy, S.J.* and Felsky, D.*
Frontiers in Molecular Neuroscience


Reduced inhibition in depression impairs stimulus processing in human cortical microcircuits.

Yao, H.K., Guet-McCreight, A., Mazza, F., Chameh, H.M., Prevot, T.D., Griffiths, J.D., Tripathy, S.J., Valiante, T.A., Sibille, E. and Hay, E.
Cell reports


The Neuron Phenotype Ontology: A FAIR Approach to Proposing and Classifying Neuronal Types

Gillespie, T.H., Tripathy, S.J., Sy, M.F. Martone M.E., Hill S.L.


Neurobiological, familial and genetic risk factors for dimensional psychopathology in the Adolescent Brain Cognitive Development study.

Wainberg, M., Jacobs, G.R., Voineskos, A.N. and Tripathy, S.J.
Molecular Psychiatry


Predicting causal genes from psychiatric genome-wide association studies using high-level etiological knowledge.

Wainberg, M., Merico, D., Keller, M.C., Fauman, E.B. and Tripathy, S.J.
Molecular Psychiatry


Deletion of Loss-of-Function–Intolerant Genes and Risk of 5 Psychiatric Disorders.

Wainberg M, Merico D, Huguet G, Zarrei M, Jacquemont S, Scherer SW, Tripathy SJ.
JAMA Psychiatry


Association of accelerometer-derived sleep measures with lifetime psychiatric diagnoses: A cross-sectional study of 89,205 participants from the UK Biobank.

Wainberg, M., Jones, S.E., Beaupre, L.M., Hill, S.L., Felsky, D., Rivas, M.A., Lim, A.S., Ollila, H.M. and Tripathy, S.J.
PLoS Medicine


Clinical laboratory tests and five-year incidence of major depressive disorder: a prospective cohort study of 433,890 participants from the UK Biobank.

Wainberg, M., Kloiber, S., Diniz, B., McIntyre, RS., Felsky, D., Tripathy, SJ.
Transl Psychiatry


Symptom dimensions of major depression in a large community-based cohort.

Wainberg M, Zhukovsky P, Hill SL, Felsky D, Voineskos A, Kennedy S, Hawco C, Tripathy SJ
Psychological Medicine


Diversity amongst human cortical pyramidal neurons revealed via their sag currents and frequency preferences.

Moradi H, Rich S, Wang L, Chen FD, Zhang L, Carlen PL, Tripathy SJ*, Valiante TA*
Nature Communications


Cannabis, schizophrenia genetic risk, and psychotic experiences : A cross-sectional study of 109,308 participants from the UK Biobank.

Wainberg M, Jacobs GR, di Forti M, Tripathy SJ
Translational Psychiatry


Estimating and Correcting for Off-Target Cellular Contamination in Brain Cell Type Specific RNA-Seq Data.

Sicherman J, Newton D, Pavlidis P, Sibille E, Tripathy SJ
Frontiers in Molecular Neuroscience


Patch-seq: Past, Present, and Future.

Lipovsek M, Bardy C, Cadwell CR, Hadley K, Kobak D, Tripathy SJ
Journal of Neuroscience


Consequences of NMDA receptor deficiency can be rescued in the adult brain.

Mielnik C, Binko M, Chen Y, Funk A, Johannsson E, Katheron I, Sivananthan N, Islam R, Milenkovic M, Horsfall W, Ross R, Groc L, Salahpour A, McCullumsmith M, Tripathy SJ, Lambe E, Ramsey AJ.
Molecular Psychiatry


Assessing the molecular overlap between human major depressive disorder and three mouse models of chronic stress.

Tripathy SJ
Biological Psychiatry


Single nucleus RNA sequencing implicates OPCs and deep layer excitatory neurons in the pathophysiology of major depression.

Nagy C, Maitra M, Tanti A, Suderman M, Theroux JF, Davoli MA, Perlman K, Yerko V, Tripathy SJ, Pavlidis P, Mechawar N, Ragoussis J, Turecki G
Nature Neuroscience


The Neuron Phenotype Ontology: A FAIR Approach to Proposing and Classifying Neuronal Types.

Gillespie TH, Tripathy SJ, Sy MF, Martone ME, Hill SL


Transcriptomic correlates of electrophysiological and morphological diversity within and across neuron cell types.

Bomkamp C*, Tripathy SJ*, Bengtsson Gonzales C, Hjerling-Leffler J, Craig AM, Pavlidis P. PLoS Computational Biology.


Transcriptomic evidence for alterations in astrocytes and parvalbumin interneurons in five cohorts of schizophrenia and bipolar subjects

Toker L, Mancarci BO, Tripathy SJ, Pavlidis P. Biological Psychiatry.


Assessing transcriptome quality in patch-seq datasets.

Tripathy SJ, Toker L, Bomkamp C, Mancarci O, Belmadani M, Pavlidis P. Frontiers in Cellular Neuroscience.


Modeling sources of inter-laboratory variability in electrophysiological properties of mammalian neurons.

Tebaykin D*, Tripathy SJ*, Binnion B, Li B, Gerkin RC, Pavlidis P. Journal of Neurophysiology.


Cross-laboratory analysis of brain cell type specific transcriptomes with applications to bulk tissue data.

Mancarci BO, Toker L, Tripathy SJ, Li B, Rocco B, Sibille E, Pavlidis P. eNeuro.


Transcriptomic correlates of neuron electrophysiological diversity.

Tripathy SJ, Toker L, Li B, Crichlow CL, Tebaykin D, Mancarci O, Pavlidis P. PLoS Computational Biology.


Neurodata Without Borders: Creating a Common Data Format for Neurophysiology.

Teeters JL, ...Tripathy SJ, ... Svoboda K, Sommer FT. Neuron.


Agile text mining with Sherlok.

Richardet R, JC Chappelier, Tripathy SJ, Hill S. IEEE Big Data.


Brain-wide analysis of electrophysiological diversity yields novel categorization of mammalian neuron types.

Tripathy SJ, Burton SD, Geramita M, Gerkin RC, Urban NN. Journal of Neurophysiology.


NeuroElectro: a window to the world’s neuron electrophysiology data.

Tripathy SJ, Savitskaya J, Burton SD, Urban NN, Gerkin RC. Frontiers in Neuroinformatics .


Intermediate intrinsic diversity enhances neural population coding.

Tripathy SJ, Padmanbhan K, Gerkin RC, Urban NN. PNAS.