Selected Publications

A full and up-to-date publication list is available at Google Scholar.

Patch-seq: Past, Present, and Future.

Lipovsek M, Bardy C, Cadwell CR, Hadley K, Kobak D, Tripathy SJ


Consequences of NMDA receptor deficiency can be rescued in the adult brain.

Mielnik C, Binko M, Chen Y, Funk A, Johannsson E, Katheron I, Sivananthan N, Islam R, Milenkovic M, Horsfall W, Ross R, Groc L, Salahpour A, McCullumsmith M, Tripathy SJ, Lambe E, Ramsey AJ.


Assessing the molecular overlap between human major depressive disorder and three mouse models of chronic stress.

Tripathy SJ


Single nucleus RNA sequencing implicates OPCs and deep layer excitatory neurons in the pathophysiology of major depression.

Nagy C, Maitra M, Tanti A, Suderman M, Theroux JF, Davoli MA, Perlman K, Yerko V, Tripathy SJ, Pavlidis P, Mechawar N, Ragoussis J, Turecki G


The Neuron Phenotype Ontology: A FAIR Approach to Proposing and Classifying Neuronal Types.

Gillespie TH, Tripathy SJ, Sy MF, Martone ME, Hill SL


Sag currents are a major contributor to human pyramidal cell intrinsic differences across cortical layers and between individuals.

Moradi H, Wang L, Zhang L, Carlen P, Tripathy SJ*, Valiante TA*


Transcriptomic correlates of electrophysiological and morphological diversity within and across neuron cell types.

Bomkamp C*, Tripathy SJ*, Bengtsson Gonzales C, Hjerling-Leffler J, Craig AM, Pavlidis P. PLoS Computational Biology.


Transcriptomic evidence for alterations in astrocytes and parvalbumin interneurons in five cohorts of schizophrenia and bipolar subjects

Toker L, Mancarci BO, Tripathy SJ, Pavlidis P. Biological Psychiatry.


Assessing transcriptome quality in patch-seq datasets.

Tripathy SJ, Toker L, Bomkamp C, Mancarci O, Belmadani M, Pavlidis P. Frontiers in Cellular Neuroscience.


Modeling sources of inter-laboratory variability in electrophysiological properties of mammalian neurons.

Tebaykin D*, Tripathy SJ*, Binnion B, Li B, Gerkin RC, Pavlidis P. Journal of Neurophysiology.


Cross-laboratory analysis of brain cell type specific transcriptomes with applications to bulk tissue data.

Mancarci BO, Toker L, Tripathy SJ, Li B, Rocco B, Sibille E, Pavlidis P. eNeuro.


Transcriptomic correlates of neuron electrophysiological diversity.

Tripathy SJ, Toker L, Li B, Crichlow CL, Tebaykin D, Mancarci O, Pavlidis P. PLoS Computational Biology.


Neurodata Without Borders: Creating a Common Data Format for Neurophysiology.

Teeters JL, ...Tripathy SJ, ... Svoboda K, Sommer FT. Neuron.


Agile text mining with Sherlok.

Richardet R, JC Chappelier, Tripathy SJ, Hill S. IEEE Big Data.


Brain-wide analysis of electrophysiological diversity yields novel categorization of mammalian neuron types.

Tripathy SJ, Burton SD, Geramita M, Gerkin RC, Urban NN. Journal of Neurophysiology.


NeuroElectro: a window to the world’s neuron electrophysiology data.

Tripathy SJ, Savitskaya J, Burton SD, Urban NN, Gerkin RC. Frontiers in Neuroinformatics .


Intermediate intrinsic diversity enhances neural population coding.

Tripathy SJ, Padmanbhan K, Gerkin RC, Urban NN. PNAS.